PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45590.3.p
Common NameBRADI_3g45590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 255aa    MW: 28553 Da    PI: 6.5046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45590.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000193555323
                      ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                      C  C   Fs   nLk H++tH
  Bradi3g45590.3.p 35 CLGCYPAFSLDFNLKAHMKTH 55
                      999*****************9 PP

2zf-C2H218.45.8e-066186123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      ++Cp   Cg++F++ s L+ H rt H
  Bradi3g45590.3.p 61 HPCPypECGRRFTQESKLRAHFRTqH 86
                      689999*****************999 PP

3zf-C2H212.60.00041125150123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y+Cp   C k + + + L+ H+++ H
  Bradi3g45590.3.p 125 YVCPydGCAKAYIHEYKLNLHLKKeH 150
                       99*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355603355IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-43556IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-104187No hitNo description
SMARTSM003550.00576186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-86184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6976190IPR007087Zinc finger, C2H2
PROSITE patternPS0002806386IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-9117147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-5120148No hitNo description
SMARTSM003550.012125150IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58125155IPR007087Zinc finger, C2H2
PROSITE patternPS000280127150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MHGYFLLKSS MLGFCLSSTL LVLELWPFHY LSVGCLGCYP AFSLDFNLKA HMKTHFADNY  60
HPCPYPECGR RFTQESKLRA HFRTQHEKNP GMPAAMNRNA LGDHPHNTVK PPPVTPPVPS  120
AERPYVCPYD GCAKAYIHEY KLNLHLKKEH PNHFSDAGAQ AGPSRSTASK SSRRSRPSAT  180
AKMPLPKIPK RGAEYTTPSP AINIAEEHQW PRKVLYDDDS EETEEEGDKP ADMGWGRIAA  240
SSDDDDDEET EDEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235528.11e-158PREDICTED: uncharacterized zinc finger protein At4g06634-like
TrEMBLA0A0Q3IGP50.0A0A0Q3IGP5_BRADI; Uncharacterized protein
STRINGBRADI3G45590.11e-157(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-31C2H2 family protein